SR 5-10: Allele-specific oligonucleotide (ASO) dot-blot hybridisation can identify individuals with the sickle cell mutation.
The sickle cell mutation is a single nucleotide substitution (A to T) at codon 6 in the b -globin gene, resulting in a GAG (Glu) to GTG (Val) substitution. The example shows how one can design ASOs: one specific for the normal (b A) allele and identical to a sequence of 19 nucleotides encompassing codons 3-9 of this allele, and one specific for the mutant (b S) allele, being identical to the equivalent sequence of the mutant allele. The labeled ASOs can be individually hybridized to denatured genomic DNA samples on dot-blots. The b A- and b S-specific ASOs can hybridize to the complementary antisense strand of the normal and mutatnt alleles respectively, forming perfect 19-bp duplexes. However, duplexes between the b A-specific ASO and the b S allele, or between the b S-specific ASO and the b A allele have a single mismatch and are unstable at high hybridization stringency.